rs33456801 SNP Detail

Summary

• ID
  rs33456801
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:142093462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTATTAT CATAATTCAC
  CCATAACCTT AAAAACAGGG CTTCTCTCGA GCCACGTTCT CCTCCTCCTC TTGAGTAAGC
  GCATTCATTC TTTGCAAACA CACACCGCAG CCTCCTGACC CTGGCTCGCT GAAATCCCAC
  TCGCTAATGC TTCTGATCCA GCCGCAACCA TAATTACATA AGAAGCCTTA TCCTCGGAAA
  Y
  GCTCTCAGCT CTGAACACCA TCCATCATTA TTCTCTGAAA ATGCAAGAAC TATTCCACAG
  CTGCCTCTCC CATCCAGGAT GCTCAGGAAA GAGACTGCCG AGGTCCTGTG AATGAGTCTC
  TTTGGCGTGT CAGGGTGAGG TGTGGGTGTT AATTTTTATG TTCAGCACAC CAGGGTGCAG
  GTCCCGCTAA TGATGCCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45781695	mCV25013595	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T		T
ss51529101	NES14869838	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		C	T	T	C	T	C	C
ss144586631	ENSMUSSNP3096995	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33456801					SNP	C	C	T	T	T	C	T	T	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51529101	NES14869838	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142093462 () rs orientation: forward

Symbol	Name	Function Class
D330005C11Rik	RIKEN cDNA D330005C11 gene	1724 bp upstream
Sdk1	sidekick cell adhesion molecule 1	Intron