rs33456196 SNP Detail

Summary

• ID
  rs33456196
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127598320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCATGGGC ATTTATTTGT
  CAACTAGACT CTGCCAGGAA TGAAGTTATT CATGGACATC TTACTAAACT CATGGGTAAA
  TCAGAGTCAG GATGCAGACT CTTCTATGAG GTAACAACTC AACAGACTCT CTCCTAAGCA
  CAAACTGCAG GAAGTGTGGT GTCCACATGG AGAGAAGGAA GATTCTGATG TCACTAAAAT
  K
  ATTTGACTTT AATGGTATGT AAGTAATAAG CTTTAACTTT CAAATGTATT GAGTCATTAC
  TTGCAGTGAA GTCAGTATTC AGGTGTGCCC ATCCCCTCCC CTGCTAGCTC TGTGCTCTTC
  GGAGTTGTTG CCCCTGTGTC CCATGTGCCT CTCTTCTGTG GAAGTGTAAC TTAAATGCAG
  AGAGAAGCTA ACGGGCCTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45280636	mCV22279955	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss147540728	ENSMUSSNP5887655	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss320500681	CHEV_2_127582136	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33456196					SNP	G	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127598320 () rs orientation: forward

Symbol	Name	Function Class
Nphp1	nephronophthisis 1 (juvenile) homolog (human)	Intron
Rr564596	regulatory region 564596	766 bp proximal
Tssr26143	transcription start site region 26143	682 bp upstream