rs33454852 SNP Detail

Summary

• ID
  rs33454852
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102914793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTATTTATTA TATGTAAGTA CACTGTAGCT GTCTTCAGAC
  ACTCCAGAAG AGGGCGTCAG ATCTTGTTAC AGATGGTTGT GAGCCACCAT GTGGTTGCTG
  R
  GATTTGAACT CCTGACCTTC GGAAGAGCAG TCGGGTGCTC TTACCCACTG AGCCATCTCA
  CCAGCCCCTC AAGAGAAGTT TTTAAAGCAA GAAACTATA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45280241	mCV24398886	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33454852					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102914793 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Apip	APAF1 interacting protein			Intron
				Noncoding-Transcript-Variant
D2Mit388	DNA segment, Chr 2, Massachusetts Institute of Technology 388			1778 bp proximal
Rr561794	regulatory region 561794			40 bp distal
Rr561795	regulatory region 561795			47 bp proximal