rs33452339 SNP Detail

Summary

• ID
  rs33452339
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128136449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAAGGTCCCT AAAGATTAAA TTCCAGTGAA AAGCCCCCAA GGGCAAATGT GCCCTGACCT
  GCCGAGCTTG GCATGGGAGG TTCCTGTCTT AGTTACTGTT ATCATGGCAA AGGCAACTTA
  TAGAAGAAAG CTTTTAACTG GGGGCTTGCT TACTGCTTCA GAGGACGAAT TGCTTATCAT
  TGTGGCAGGG AGCATGGCAG CACACAGCAG ATGGGGTGCT GGAGAGGTAA CTGGAAGCTA
  CATCCTGATC TGCAGTCTGC AGGCAGCAAG GACGGGGACA CACACACACA CACACACACA
  S
  ACAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAA GAGAGAGGCC
  CATCCCCAGT GGCACACCAA CTGGGTATCA AAGATTCAAA TATGTGAGCC CACGGGGGGG
  GGGGGGCTTT CTCACTCAAA CCACCACAGC AACAGAGTCT AGAACAGGGC TTTGGAGGCA
  GCCCTGACTC TCTCCCCTTT CTTTACACAG AGCACCTCAT TATTCTCAGA CAGTGCCATT
  CTGAGAGCAG GCACCAAACC GACAGTGAGT TTTGGCCAAG ACTTCCCTTT TTGCATGGTT
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45280204	mCV22523402	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G
ss147556618	ENSMUSSNP5058711	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33452339					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128136449 () rs orientation: forward

Symbol	Name	Function Class
Rr397297	regulatory region 397297	657 bp upstream
Rr564694	regulatory region 564694	3 bp proximal
Rr564695	regulatory region 564695	628 bp proximal
Rr564696	regulatory region 564696	1276 bp proximal
Tssr26154	transcription start site region 26154	470 bp downstream
Tssr26155	transcription start site region 26155	506 bp downstream