rs33451831 SNP Detail

Summary

• ID
  rs33451831
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:24599677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCAGGTAAA AACACAAGAG CAACTTGGAG TGTGGGCCAT
  TGACCACCGT CCGACATCGC GCGGGGCCCG CCGGGATATG TAGTTCCGGG CTCGCGCGGG
  R
  CTTGCTGGGA GATGTAGGCT GTCTCGGAGG GTGTGGAATG TCACTGTCCA GGGAATTGGC
  CTCAATTATT CATGATGCTG TGTGGTGCCA GCAGGAGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45780994	mCV25442916	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss321495656	CHEV_5_23900497	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33451831					SNP	G	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24599677 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abcb8	ATP-binding cassette, sub-family B member 8			Intron
				Noncoding-Transcript-Variant
Rr398998	regulatory region 398998			970 bp downstream
Rr398999	regulatory region 398999			209 bp downstream
Rr608299	regulatory region 608299			514 bp distal
Rr608300	regulatory region 608300			1138 bp distal
Rr608301	regulatory region 608301			within coordinates
Rr608302	regulatory region 608302			1559 bp proximal
Rr608303	regulatory region 608303			1769 bp proximal
Tssr45411	transcription start site region 45411			1015 bp downstream
Tssr45412	transcription start site region 45412			249 bp downstream
Tssr50319	transcription start site region 50319			1981 bp upstream