rs33447021 SNP Detail

Summary

• ID
  rs33447021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163322203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCATATGGTA ATACAGGCAT ACATGCAGAC AAAATACCCC CATAGATGAT AGATAGATAG
  ATAGATAGAT AGATAGATAG AATCATTACT TATGCAGTGA GCAAAAGGAA ATTATTTTTG
  AACTTTAAAT AGATTCTTTA CGGGTAGAAA AGAAATAACC TCAAATAACA GCTACAGAAT
  AATTATGTCT TTCATCTCAA GGAATTCCCA CCATTAGGAA TGGCTGTGGA TGCTGCTCTG
  CGGTCCCTAG AGTCTGGAAG ATGCTGAGAT GAAACATTGG GGTTTGGCGA GGTCAGCTTA
  R
  GCCCTGGAAG AGAGGGAAGG GCATGGCCAT CGGTCTGCTA GAGGAGCAGT GGGCAACGGT
  CATTCCCGGA AGAGTGACCA GCCGTGCCCT TTTGTTGGCT GGCGCCGAGC GCGAGAGACA
  GCCAAGTGTA CTCTCCCAGG AGGAGGCTCT CCTTGTCCAC AGTTGCTGGC CAAGCAAGAT
  GAGCACTCAC TCCTAGCACC AATTCCTTCC TTCTGGAACT CTTTCTGCAA AGTCTCCCCA
  ATGAATCACC CCCTGGCCAC GACTCTTTCT GACCCAAGGG AATAGTCAGC CACTGCCTGG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45279811	mCV27591272	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss148205187	ENSMUSSNP2082841	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33447021					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163322203 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12636	CpG island 12636	1340 bp proximal
Rr569389	regulatory region 569389	231 bp proximal
Rr569390	regulatory region 569390	327 bp proximal
Rr569391	regulatory region 569391	559 bp proximal
Rr569392	regulatory region 569392	1227 bp proximal
Rr569393	regulatory region 569393	1411 bp proximal