rs33445874 SNP Detail

Summary

• ID
  rs33445874
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:150589816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAAAATAGAG TGCCTGCACC TCAGAACCCC ATAACAGATG ACTCTTGGGG AGAAGAAATT
  ATAAAGTATC TTACTTCCAG ATATAGGAAA ACTGCTATAT AAATATGTAT TGAATTAAAA
  CTAAATACCA ACCAAATGAC TAGCTCCAGT TAAAGGTCTT TTTTTTTCTC CTTTCCATTT
  CTATTAGCCT GTCGTCCTCT CCACCCCTTG TTTCGTTTGG GCCCGCACAA GAAGATCGGC
  CATCTCAGCA TATTTGAATA AGTCTTGTCT CCAACACAAT AATGTTTTTT TTTTTTTTTT
  W
  AAGATTTATT TATTATTTTA AGTACACTGT AGCTGTCTTC AGACACACCA GAAGAGGGAG
  TCAGATCTTG TTACGGATGG TTGTGAGCCA CCATGTGGTT GCTGGGATTT GAACTCTGGA
  CCTTCGGAAG AGCAGTCGGG TGCTCTTACC CTCTGAGCCA TCTCACCAGC CCCCACAATA
  ATGTTTTAAT TTATAAGTAT AATAGATAAA AAGCACAGTG AAGCCGGGCA GTGGTGGAGC
  ACGCCTTTAG TCCCAGCACT TGGGAGGCAG AGGCAGGCAG ATTTCTGAGT TCAAGGCCAG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45779723	mCV27595232	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss144718568	ENSMUSSNP6059854	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33445874					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:150589816 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17110	CpG island 17110	560 bp distal
Gm71525	predicted gene, 71525	159 bp downstream
N4bp2l2	NEDD4 binding protein 2-like 2	168 bp upstream
Rr399543	regulatory region 399543	406 bp downstream
Rr625784	regulatory region 625784	1078 bp distal
Rr625785	regulatory region 625785	750 bp distal
Rr625786	regulatory region 625786	742 bp distal
Rr625787	regulatory region 625787	249 bp distal
Rr625788	regulatory region 625788	463 bp distal
Rr625789	regulatory region 625789	44 bp proximal
Tssr49954	transcription start site region 49954	1043 bp downstream
Tssr54667	transcription start site region 54667	1125 bp upstream
Tssr54668	transcription start site region 54668	974 bp upstream
Tssr54669	transcription start site region 54669	907 bp upstream
Tssr54670	transcription start site region 54670	745 bp upstream