rs33442682 SNP Detail

Summary

• ID
  rs33442682
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101261639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTTGTCT GATTTTACTC
  TGACTTTTTT TTTTATTAAT ATAAAATTTT ATTGGCATAC ACAGTGATAG TTTCAAAAGG
  ATGTCATCAC ACACGTACGT TAATTCTCAC TTTTCATCAC CACATGACTA TCTTTAGACT
  TTGCTGTTAG GTCAAGTAGA AACCCAGGGC TATATATCAC ATGAATTTTT GAGGCTGCAT
  M
  ATCTTCCAGG TTCCTGCTGT GTATTTCTAG GTGTCTCCTT GCTTCTGCCT CCCCTTCTGC
  TTCCTCCTCC ACTCCACCTC CTTACCTTCT ATTCTCCTTT CTTCTTTTCT GTCCCCAATG
  TCTTTCCACC ACTGATCTCC AATGCTTTTA AACGACCTTG GTTCCTGCCC TTCAGCTGCA
  TTTATCCTAG ATAAGACTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46813910	NES10711790	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33442682					SNP	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813910	NES10711790	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101261639 () rs orientation: forward

Symbol	Name	Function Class
Gm32900	predicted gene, 32900	within coordinates
Rr582017	regulatory region 582017	within coordinates
Rr582018	regulatory region 582018	133 bp proximal
Rr582019	regulatory region 582019	1231 bp proximal