rs33440398 SNP Detail

Summary

• ID
  rs33440398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101226354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACGCCATC CTGAAAGCAG
  TGGGAACTGA ACAAGAGTGG TCCAAGCCAG CCAACTCAGA ACATGTGTGC ACTTTACAGG
  GCTCCTTCTG ACAGCAGCTT GTAAACTGAC CTGGCTTGGA GGTGAGATTA GAGGCCAGGT
  GAGGCAGGTA CATCAACATG CCTGCGGGTG GTTCTGATCC CAAGCCAAAC TGCTGCAAGA
  Y
  AGCTCATGCC ACACGGGCTA ATGCCAGCCA TGCGGAGCCT GCACCTTTTA CCATTTTCTT
  CCTTTCTGCA TCAGGTAAGG CCTGGGTGTT GTCTGGGTCT GGTTTTCTAC ACGGTGAGCC
  CCAGAAGACA GGAACCTGAA GCATCAAATC TTTAGACTGA CGGAGCCCTG TGTCCTACCT
  TCTCTCACCA TGCAGAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46813520	NES10713833	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33440398					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813520	NES10713833	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101226354 () rs orientation: forward

Symbol	Name	Function Class
Gm64409	predicted gene, 64409	within coordinates
Rr582007	regulatory region 582007	921 bp distal
Rr582008	regulatory region 582008	628 bp distal
Rr582009	regulatory region 582009	713 bp distal
Rr582010	regulatory region 582010	311 bp distal