rs33439677 SNP Detail

Summary

• ID
  rs33439677
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101225014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGATATA TCTGGGTCCT
  TTCAGCAAAA TCTTGCTGGC ATATGCAATG GTGTCAGCGT TTGGAGGCTG ATTATGGGAT
  GGATCCCCGG GTGTGGCAGT CTCTAGATGG TCCATCCTTT CGTCTCAGCT CCAAACTTTG
  TCTCTGTAAC TCCTTCCATG GGTGTTTTGT TCCCAATTCT AAGAAGGATG TCTGCCATTT
  S
  TTTAGAGTTT GTCTTTTATC GTTCCTTCTC TACCAGGCAG GGTGCCAGGA CTAAGCTGTG
  CGGGATTTGG TATGTGTGTC TGTGCACCAC GTGTGAGTCT AGTGTCCTCA GAGGCCAGAG
  GAGGGTGTCA GATCCCCTGC AACTGGAGTT ACAGACAGTT GTGAGTACCC TTGTGGGTGC
  TGGGAATTTA ATCCAGGTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46813508	NES10713898	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33439677					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813508	NES10713898	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101225014 () rs orientation: forward

Symbol	Name	Function Class
Gm64409	predicted gene, 64409	702 bp upstream
Rr582007	regulatory region 582007	398 bp proximal
Rr582008	regulatory region 582008	521 bp proximal
Rr582009	regulatory region 582009	606 bp proximal
Rr582010	regulatory region 582010	713 bp proximal