rs33439493 SNP Detail

Summary

• ID
  rs33439493
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127600221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGGGATCTC TCTCAGGATC AGAGTCCGCA CACGGGGGAT
  CTCTGGTGAG TGTGCACTCC AGTGGGTTAT TTCTCTGACA AGCATTAAAG CACACTTCTG
  M
  CGTTCCCTTG CCATTGTCTC AAGTCCCTAA GTAAGAACTG TGCCCTACAG GGTTAAGTGG
  CCTCCTCTGG GAAGTCCCAG CCTTTAAGAG ACATTTTGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45278558	mCV22280252	ABI	CRAMUS_MOUSE	f	SNP	A	C
ss147540778	ENSMUSSNP1043786	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs33439493					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127600221 () rs orientation: forward

Symbol	Name	Function Class
Nphp1	nephronophthisis 1 (juvenile) homolog (human)	Intron
Rr564596	regulatory region 564596	660 bp distal
Rr564597	regulatory region 564597	1010 bp proximal