rs33439080 SNP Detail

Summary

• ID
  rs33439080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101260379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACTACAT TAATGTTAAA
  TTTATATTTT TAGAAGTATT CTTTCTTATT GGGTCCCTGG AGAGACAGTC CCATGGTTAA
  GAGTGCCCAC TGTTCTTCCA GAGCACTGAA CTGAGAGTTG AGAAATGAGT CCAGAAGATG
  ACACAGAGGT GGCTGCAGAA GCACATGGCT GGGACAGGAG TTCAGTCACA GCCAGCATCC
  Y
  ACAGGACAAA GGCCTCGTGC TGATCACTGG TAGGACAAAC TCACAACCTC CTGTAACTCC
  AGCTCATGGC ATCCAGCGCC CTGTCTGGCC TCTGGGTACC TGAAGGCACA TGGCATACAA
  ACATACATAC ATACACATCA ATAAAAATAT TATTTTTACC TTTGAGGCAG AGTCTCACTA
  CATAGCCCTG GCTGACTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46813865	NES10711913	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T	T	T	C		T	T	C	T
ss135546694	ENSMUSSNP772192	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T								C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33439080					SNP	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813865	NES10711913	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101260379 () rs orientation: forward

Symbol	Name	Function Class
Gm32900	predicted gene, 32900	within coordinates
Rr582016	regulatory region 582016	1979 bp distal
Rr582017	regulatory region 582017	1155 bp proximal
Rr582018	regulatory region 582018	1393 bp proximal