rs33439077 SNP Detail

Summary

• ID
  rs33439077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101260296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAATATAC CAATCAAATT
  GTCATGAGTA ATACAAATGA AATAAAACAC ATTTTTAGGT AGTTGGGTTC TACATCAAAG
  AATGCCACTA CATTAATGTT AAATTTATAT TTTTAGAAGT ATTCTTTCTT ATTGGGTCCC
  TGGAGAGACA GTCCCATGGT TAAGAGTGCC CACTGTTCTT CCAGAGCACT GAACTGAGAG
  Y
  TGAGAAATGA GTCCAGAAGA TGACACAGAG GTGGCTGCAG AAGCACATGG CTGGGACAGG
  AGTTCAGTCA CAGCCAGCAT CCTACAGGAC AAAGGCCTCG TGCTGATCAC TGGTAGGACA
  AACTCACAAC CTCCTGTAAC TCCAGCTCAT GGCATCCAGC GCCCTGTCTG GCCTCTGGGT
  ACCTGAAGGC ACATGGCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46813862	NES10711911	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	C		T	T	C	T
ss135546685	ENSMUSSNP5031047	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T									C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33439077					SNP	T	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813862	NES10711911	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101260296 () rs orientation: forward

Symbol	Name	Function Class
Gm32900	predicted gene, 32900	within coordinates
Rr582016	regulatory region 582016	1896 bp distal
Rr582017	regulatory region 582017	1238 bp proximal
Rr582018	regulatory region 582018	1476 bp proximal