rs33438881 SNP Detail

Summary

• ID
  rs33438881
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101224248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACCTGGC AACTTCAGCT
  TCCTCCTCCC TTGTGTTTAC AGCCTTGAGA CTGCTTGCCT ATAGACACCC CCTACCAACC
  GTAACTAACC CCTCTCCCGT GCTCTAGATA ATAAATGTAG TGAGGTTCTG GGTTGTTATA
  GTAGCTCGTA GACTCACTCT ATCAGAGTGT GCACAGCCTA CCTGACCTCA GTTTTTCTGT
  R
  TGCATGTCTG CCATTTCTTC TTCTTCTTCT TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT
  TCTTCTTCTT CTTCTTCTTC TTCTTCTTCT TTTTTAATAT TTTAAAATAT ATTTTATTCC
  TTTTTAGACA ATTTCATACC TGTCTATATC CTTTTTAAAA GAAGATTTTT ATTTTTTATT
  TTTTGTTTAT TAGGTATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46813502	NES10713987	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33438881					SNP	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813502	NES10713987	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101224248 () rs orientation: forward

Symbol	Name	Function Class
Gm64409	predicted gene, 64409	1468 bp upstream
Rr375462	regulatory region 375462	1809 bp downstream
Rr582007	regulatory region 582007	1164 bp proximal
Rr582008	regulatory region 582008	1287 bp proximal
Rr582009	regulatory region 582009	1372 bp proximal
Rr582010	regulatory region 582010	1479 bp proximal