rs33438875 SNP Detail

Summary

• ID
  rs33438875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101223967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGGACA CAAATGAGGT
  GCTTACCTGT GAAACTTTTA ATGTTAATCA TTTAAAAATT AATTATTTTA TGTTTATGGG
  TGCTTTGCCT GCATCTATTA TATATAGGGA ATGGGTGAAG TCCCGAGAGA CTGAAGTCCC
  GAAGGAGTGG GTACCGAGTG ACCTGGGTTG GCCATGTCAA GGACATGGAA TCGACCTAAG
  R
  GAAACTGGGG ATGTCTTTCC TCCAGGGCAG GTTTGGAAAG GCAAAGCCTT CCTTTACCCA
  AATATGTGAC TCGTGTGTAC AAAACCTGGC AACTTCAGCT TCCTCCTCCC TTGTGTTTAC
  AGCCTTGAGA CTGCTTGCCT ATAGACACCC CCTACCAACC GTAACTAACC CCTCTCCCGT
  GCTCTAGATA ATAAATGTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46813496	NES10713985	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33438875					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813496	NES10713985	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101223967 () rs orientation: forward

Symbol	Name	Function Class
Gm64409	predicted gene, 64409	1749 bp upstream
Rr375462	regulatory region 375462	1528 bp downstream
Rr582007	regulatory region 582007	1445 bp proximal
Rr582008	regulatory region 582008	1568 bp proximal
Rr582009	regulatory region 582009	1653 bp proximal
Rr582010	regulatory region 582010	1760 bp proximal