rs33438444 SNP Detail

Summary

• ID
  rs33438444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101262598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCACAGA CCCACACATT
  AAAAACTTGG CGGACTGAAG GTTAATAGTC TTCTATAACA CCAGTGCAGA CACAATGTTT
  TTATTAGTTT TACCTACAAA GCCCTGCTCA CTTTTAACAT ATACACACTT CAAACAAAGT
  ATATAACCTG GGCATAGGCT GTTTGCTCCA TTCCCCTGAC TCTTCCTCCC AAACTTGGGG
  Y
  TCCTAGAATC TTAGCAGCAG CAACAACAAA GAAAAAAAAA TGGAGCCAAG CATGTTGGCA
  AACACCTTTA ATCCCAGATC TCTGGAGGCA AAAGCAATCA GAACTCTGAG TTCAAGATCA
  GCCTAGTTTA CAAAGCCCAT TCCAGGCGAG CCTGAGCTAC ATACAAAGTG AGACCGTGTC
  TTAAACAAAC AAACAAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46813943	NES10711755	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33438444					SNP	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813943	NES10711755	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101262598 () rs orientation: forward

Symbol	Name	Function Class
Gm32900	predicted gene, 32900	679 bp upstream
Rr582017	regulatory region 582017	827 bp distal
Rr582018	regulatory region 582018	189 bp distal
Rr582019	regulatory region 582019	272 bp proximal
Rr582020	regulatory region 582020	1402 bp proximal