rs33438132 SNP Detail

Summary

• ID
  rs33438132
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101223795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGAGACC TGGTGGACCT
  CGATGAGAGA AGCGTGCACG GAGGTATGCT GGGAAGGGTT TATCTGGGCC CCGCCTCTTC
  CTGTGAATGA GCCAGCTAGC CACCCCAGGG GCTTCCTCTC TGAGTCTGCA CATGTGGATT
  AGTAGGCAAG TCAGCTTGGG ATAAGAAAGG AAACAGGGGA CACAAATGAG GTGCTTACCT
  R
  TGAAACTTTT AATGTTAATC ATTTAAAAAT TAATTATTTT ATGTTTATGG GTGCTTTGCC
  TGCATCTATT ATATATAGGG AATGGGTGAA GTCCCGAGAG ACTGAAGTCC CGAAGGAGTG
  GGTACCGAGT GACCTGGGTT GGCCATGTCA AGGACATGGA ATCGACCTAA GAGAAACTGG
  GGATGTCTTT CCTCCAGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46813493	NES10713984	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	G	G	G	G		G	G		A
ss135546532	ENSMUSSNP1066166	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					G
ss320851822	CHEV_3_101120402	CHEVERUD	SCREENING_POP	f	SNP											G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33438132					SNP	G	G	A	G	A	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813493	NES10713984	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101223795 () rs orientation: forward

Symbol	Name	Function Class
Gm64409	predicted gene, 64409	1921 bp upstream
Rr375462	regulatory region 375462	1356 bp downstream
Rr582007	regulatory region 582007	1617 bp proximal
Rr582008	regulatory region 582008	1740 bp proximal
Rr582009	regulatory region 582009	1825 bp proximal
Rr582010	regulatory region 582010	1932 bp proximal