rs33438129 SNP Detail

Summary

• ID
  rs33438129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101223741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCAGGAGA CATGATCGGT
  GATGCATTCG GAAGATGAGT GGAGTAATGG GGGCAGTGGA GACCTGGTGG ACCTCGATGA
  GAGAAGCGTG CACGGAGGTA TGCTGGGAAG GGTTTATCTG GGCCCCGCCT CTTCCTGTGA
  ATGAGCCAGC TAGCCACCCC AGGGGCTTCC TCTCTGAGTC TGCACATGTG GATTAGTAGG
  Y
  AAGTCAGCTT GGGATAAGAA AGGAAACAGG GGACACAAAT GAGGTGCTTA CCTGTGAAAC
  TTTTAATGTT AATCATTTAA AAATTAATTA TTTTATGTTT ATGGGTGCTT TGCCTGCATC
  TATTATATAT AGGGAATGGG TGAAGTCCCG AGAGACTGAA GTCCCGAAGG AGTGGGTACC
  GAGTGACCTG GGTTGGCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46813490	NES10713983	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T	C	C	C	C		T	C	C	T		T
ss135546529	ENSMUSSNP4953213	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss320851821	CHEV_3_101120348	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33438129					SNP	C	C	T	C	T	C	T	C	C	C	C	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813490	NES10713983	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101223741 () rs orientation: forward

Symbol	Name	Function Class
Gm64409	predicted gene, 64409	1975 bp upstream
Rr375462	regulatory region 375462	1302 bp downstream
Rr582007	regulatory region 582007	1671 bp proximal
Rr582008	regulatory region 582008	1794 bp proximal
Rr582009	regulatory region 582009	1879 bp proximal
Rr582010	regulatory region 582010	1986 bp proximal