rs33437870 SNP Detail

Summary

• ID
  rs33437870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:38683199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAG TCAAATGGTG CTGCTTTCAC
  Y
  GTTTGTCTTT CTTAGGAACA AATCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45778919	mCV22717203	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss148266566	ENSMUSSNP6463348	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss321518759	CHEV_5_38917095	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33437870					SNP	T	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38683199 () rs orientation: forward

Symbol	Name	Function Class
Tssr50807	transcription start site region 50807	1339 bp downstream
Tssr50808	transcription start site region 50808	1424 bp downstream
Tssr50809	transcription start site region 50809	1825 bp downstream
Wdr1	WD repeat domain 1	950 bp downstream