rs33437621 SNP Detail

Summary

• ID
  rs33437621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101262591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGACCGGG TCACAGACCC
  ACACATTAAA AACTTGGCGG ACTGAAGGTT AATAGTCTTC TATAACACCA GTGCAGACAC
  AATGTTTTTA TTAGTTTTAC CTACAAAGCC CTGCTCACTT TTAACATATA CACACTTCAA
  ACAAAGTATA TAACCTGGGC ATAGGCTGTT TGCTCCATTC CCCTGACTCT TCCTCCCAAA
  Y
  TTGGGGCTCC TAGAATCTTA GCAGCAGCAA CAACAAAGAA AAAAAAATGG AGCCAAGCAT
  GTTGGCAAAC ACCTTTAATC CCAGATCTCT GGAGGCAAAA GCAATCAGAA CTCTGAGTTC
  AAGATCAGCC TAGTTTACAA AGCCCATTCC AGGCGAGCCT GAGCTACATA CAAAGTGAGA
  CCGTGTCTTA AACAAACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46813940	NES10711753	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	C	C	C	C		C	C	C	C		C
ss135546727	ENSMUSSNP1804975	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				C
ss320851920	CHEV_3_101159198	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33437621					SNP	C	T	T	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813940	NES10711753	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101262591 () rs orientation: forward

Symbol	Name	Function Class
Gm32900	predicted gene, 32900	672 bp upstream
Rr582017	regulatory region 582017	820 bp distal
Rr582018	regulatory region 582018	182 bp distal
Rr582019	regulatory region 582019	279 bp proximal
Rr582020	regulatory region 582020	1409 bp proximal