rs33436664 SNP Detail

Summary

• ID
  rs33436664
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101262164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACAGCAGGT CCTTGCTGCT TCCAGTCCCC AGGGCCAGAA
  GTGGGCAGCC TGTCCCAGCA GCCATTGGCA AGGAGCCCTT TGCCCTGTGG ACAACCAGTC
  Y
  TGGCCAAGCT TGAGTCTCAG CCATGTGTAT CTGTGGGTAC CGCTGTGGCA TCTTGTTGAT
  TTGATCCTCA GCCTTTTCTC CTGTGTTACT TGTTCCCCAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46813922	NES10711746	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33436664					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813922	NES10711746	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101262164 () rs orientation: forward

Symbol	Name	Function Class
Gm32900	predicted gene, 32900	245 bp upstream
Rr582017	regulatory region 582017	393 bp distal
Rr582018	regulatory region 582018	within coordinates
Rr582019	regulatory region 582019	706 bp proximal
Rr582020	regulatory region 582020	1836 bp proximal