rs33436489 SNP Detail

Summary

• ID
  rs33436489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101206680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAGCTCCT TAAGTAAGTT
  AGTCTGCTGG CCAGCCAGAC TCAGGCCTCC CCTCCCCTCC CTGGAGCAGG ACATTAAGTG
  CACATTAACA ACCAGTGTTT CCACCCAGGT TCTGAGGACC AAACTCAGGT CTTTATACTT
  ACAGGGCAAG AGTTTTACCA AACGAGCCGC CCTGCCCCTG TCATTCCACC ATTTGAGTTG
  Y
  GCTTTCCCAT CTGTTTTCTC TCGTCTACCC ATTACACACC CGTTATCAGA TAATGCAGGT
  GGCTTCTGTT CTCAGCTCTT TCAAAATCCT CTTAAGAAGG GAAAGCCAGG GAACCCCTGA
  GTCTCTCTGC ACCCCTGGGA GCCCCACCTT GCATCCACCC TGTCTCTAGG AGGGCTCTAA
  GTTCTCCTTT CTGTGAAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46813286	NES10714874	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	C	C	C	C	C	C	C	C	C
ss135546316	ENSMUSSNP4213706	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33436489					SNP	C	T	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813286	NES10714874	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101206680 () rs orientation: forward

Symbol	Name	Function Class
Gm65445	predicted gene, 65445	within coordinates
Rr582002	regulatory region 582002	1868 bp distal
Rr582003	regulatory region 582003	659 bp proximal
Tssr30898	transcription start site region 30898	1858 bp downstream
Tssr30899	transcription start site region 30899	1828 bp downstream
Tssr34787	transcription start site region 34787	833 bp downstream
Tssr34788	transcription start site region 34788	870 bp downstream