rs33436486 SNP Detail

Summary

• ID
  rs33436486
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101206279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAAAACC CAGGTCCTCT
  AAAAAGCACC CAGTGTTCCT AGTGCTCTCC CCAGCCCCTT GAGGCCCAAT GTCCTCGGGG
  TTGCTTCTCT AGTCTTGATC CACCATGTCC GTGCCTCTTG TTTGATTTGG AGTCACACTT
  TCCCTGAACT CATGCTTTTT ATAATCCCAT GTTTTTATAC AGTCTAAGAA ACAAACATCT
  S
  GCTTCTACTG GATTCGTGTG TGTGTGTGTG TGTGTGTGTG CGTGTGTGTG TGTGTGTGTG
  TGTGCTCGTG CATGCACACA CGTGTACACA CAGGGTAGGT GGGGGTTGTT TTAAATGCAC
  ATGTGCAAGC CAGAGAACTC TTAGGAATCC ATCCTCCGGA AAGCCATCTA CCTACTTTAA
  AACAAAGTCT CTACGTTACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46813283	NES10714957	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33436486					SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813283	NES10714957	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101206279 () rs orientation: forward

Symbol	Name	Function Class
Gm65445	predicted gene, 65445	within coordinates
Rr582002	regulatory region 582002	1467 bp distal
Rr582003	regulatory region 582003	1060 bp proximal
Tssr30898	transcription start site region 30898	1457 bp downstream
Tssr30899	transcription start site region 30899	1427 bp downstream
Tssr34787	transcription start site region 34787	1234 bp downstream
Tssr34788	transcription start site region 34788	1271 bp downstream