rs33435432 SNP Detail

Summary

• ID
  rs33435432
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101194349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTG GTCTTCTCCT GTTGCTCTTC
  R
  GTATCATGCC CTCTCATCAT ACCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46813211	NES10715670	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33435432					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813211	NES10715670	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101194349 () rs orientation: forward

Symbol	Name	Function Class
Cd2	CD2 antigen	Intron
Rr397889	regulatory region 397889	836 bp upstream
Rr581991	regulatory region 581991	within coordinates
Rr581992	regulatory region 581992	896 bp proximal
Tssr30895	transcription start site region 30895	464 bp downstream
Tssr30896	transcription start site region 30896	387 bp downstream
Tssr30897	transcription start site region 30897	355 bp downstream
Tssr34780	transcription start site region 34780	513 bp downstream
Tssr34781	transcription start site region 34781	808 bp downstream
Tssr34782	transcription start site region 34782	849 bp downstream
Tssr34783	transcription start site region 34783	864 bp downstream
Tssr34784	transcription start site region 34784	1094 bp downstream