rs33435427 SNP Detail

Summary

• ID
  rs33435427
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101192967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACACCGTT ACACTCACAA
  CTCATGACAC ACCTCATTGG ATAGTATAGG CCTCATGAAC ATCCTAGTAG ACAAATCTGA
  TATGTTCCGA AATCTGTCAA GCCACAACTC AGTACCACAC ATGGAAATTC TCATGCTGTG
  AGACCTTGTT TCCTACATAA TACTATTTAA AATTAGTCTT GAATAGTGTG TATGACGTGT
  R
  TATATAATGC ATGGATGAAT GTTGTGTTTA CATTTAGGTC CCATCTCCAA GAACACACAC
  ACACACACAC ACACACACAC ACACACATTT TGAAATCTTC CAAAAGCCCC AATCCTAAAC
  ACTTCTAATC TCAAACTCAT TAAGTAAGTG ATACACAACC TGCACTGGGT AATCAGGCTT
  GGGGTGGGTC AGAGGACAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46813205	NES10715712	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A	G	A	A	A	A	A	A	A
ss135546259	ENSMUSSNP828305	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33435427					SNP	A	G	A	G	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813205	NES10715712	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101192967 () rs orientation: forward

Symbol	Name	Function Class
Cd2	CD2 antigen	Intron
Rr581991	regulatory region 581991	130 bp proximal
Tssr30894	transcription start site region 30894	1494 bp downstream
Tssr30895	transcription start site region 30895	914 bp upstream
Tssr30896	transcription start site region 30896	989 bp upstream
Tssr30897	transcription start site region 30897	1024 bp upstream
Tssr34779	transcription start site region 34779	1682 bp upstream
Tssr34780	transcription start site region 34780	1895 bp downstream