rs33435421 SNP Detail

Summary

• ID
  rs33435421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101205834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGTGAGC TCCTAAGAAA
  GAAGCTCTCA TCTGCCTTCC CAGGGAGAGT GTCTCTGTGG GCTGAGGGAG AGCTCAGCGG
  TGGAGCTTGC CCAGGAGTTT GCAAGGCCTC AAGTTTGATC TCTGGCCCCA CCAAAAGAAT
  AAATGAAAGT CTGTATCTAT GTGAGCCCTT TCCCTGGGGT TTCAGGATTC CAAGTGCTGT
  R
  TGACCTAAGT TTTAGCTTTT CCTTTGTATC AAGGTTGATG GAACAGTATC TGTCTCACCT
  GGGATGGTGG TATCTGCTTC TCAACGCAGC TTTGGTTGAG ACGTAGGGCA CAAGTTTACC
  CCCAGCACAC CAAGGGCTCT ACCCAGCATT GTCTGGTATG GGCTATCTGG TATACCTCCC
  TCCATTCCTG CTATGATAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46813277	NES10715020	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33435421					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813277	NES10715020	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101205834 () rs orientation: forward

Symbol	Name	Function Class
Gm32803	predicted gene, 32803	1910 bp upstream
Gm65445	predicted gene, 65445	within coordinates
Rr582001	regulatory region 582001	1741 bp distal
Rr582002	regulatory region 582002	1022 bp distal
Rr582003	regulatory region 582003	1505 bp proximal
Tssr30898	transcription start site region 30898	1012 bp downstream
Tssr30899	transcription start site region 30899	982 bp downstream
Tssr34786	transcription start site region 34786	1952 bp upstream
Tssr34787	transcription start site region 34787	1679 bp downstream
Tssr34788	transcription start site region 34788	1716 bp downstream