rs33434344 SNP Detail

Summary

• ID
  rs33434344
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101191795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTCCTGC TTAACAGCCC
  AGGGGGAAAT ATCGCCACCC TTGGCGTTAG TGAGATTAGA CCTAGTGCCC AGCTCCCCAT
  ACTCCACCTG AAGACCTGAA TTCGTCACGC AGGGCAACAG TGAATTTTTC CTATTTCCCT
  TCTCTCTAGC TTTCAGACCA CAGTGTCTTC CCCATAGGCC TCCCGAGTCT AATTCCATTT
  Y
  CGCCCAACCT ACAAGCATGC AGAAATGCAG TTTCCTTTCC ATCCTGAGAT TCTGTGTATC
  TCAGAATAAG GAGATGATGG ATGCATCACC ATCCAGCAGA GCACATCAGG TAGTCTCAGG
  GCTGCCTGGC AAGAAACTGC CTGTCTTTCT AGAGTGAAAA ACCTTCTTCG TAGTAAGATC
  CAATTATTTC AAGAAACACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46813187	NES10715766	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33434344					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813187	NES10715766	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101191795 () rs orientation: forward

Symbol	Name	Function Class
Cd2	CD2 antigen	Intron
Rr581990	regulatory region 581990	873 bp distal
Rr581991	regulatory region 581991	1302 bp proximal
Tssr30894	transcription start site region 30894	322 bp downstream
Tssr34778	transcription start site region 34778	1318 bp upstream
Tssr34779	transcription start site region 34779	510 bp upstream