rs33433787 SNP Detail

Summary

• ID
  rs33433787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:107772991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAC AAAACAATAC CTGCAGAGGC
  Y
  AGGAGGCGGC ACTTAATTCC CTGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46275625	mCV23432075	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss145736766	ENSMUSSNP2069389	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss322826828	CHEV_8_109570259	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33433787					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:107772991 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm10627	predicted gene 10627			1885 bp upstream
Pdf	peptide deformylase (mitochondrial)			Intron
				mRNA-UTR
Tssr79282	transcription start site region 79282			1852 bp upstream
Tssr82779	transcription start site region 82779			1801 bp downstream
Tssr82780	transcription start site region 82780			1839 bp downstream
Vps4a	vacuolar protein sorting 4A			599 bp downstream