rs33433562 SNP Detail

Summary

• ID
  rs33433562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101226913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTAGATG ATTGGGGCTG
  ACATTACCTA GTCAGAATGG CTGAGATGCT AGCAGCGGGG TTGTATCTAC CTGCCTGAGG
  GCATCAGTAG ATTCCCAGGG TTCTTGTTTT GCTGAACACA CTTAGAAGCC CACACTTGTC
  AGTGTCTATA CTCTGAATAT ATGCTGCCAA CAGCAGAACT CAAAAGGCTC ATTTCTATCA
  Y
  ATCCCTACCT GCGGAACAGT AGCCAGCTGA GGATGAGAAG GAGGCCTCTC AGGATGGGCA
  AAAATCCTGA GCTGAGCCAG GAGTGAACCT AGGCTTCCAG CACTGAGTCA TGAAAGCTGG
  GAAAGGACTG AGATAGCCCT TCTTCCCAAA CCATGCTGAG TCATGAAAGC TGGGAAAGGA
  CTGAGATAGC CCTTCTTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46813532	NES10713840	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		T	C	C	T		C
ss320851834	CHEV_3_101123520	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33433562					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813532	NES10713840	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101226913 () rs orientation: forward

Symbol	Name	Function Class
Gm64409	predicted gene, 64409	within coordinates
Rr582007	regulatory region 582007	1480 bp distal
Rr582008	regulatory region 582008	1187 bp distal
Rr582009	regulatory region 582009	1272 bp distal
Rr582010	regulatory region 582010	870 bp distal