rs33433494 SNP Detail

Summary

• ID
  rs33433494
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101204005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTCGAAG AGAGGGAGGG
  ACACACGCTC CCATCAACGG AGGAAAGAGG CAGGCAAGCC GCAGAGGGAG GCTGAAGGTC
  CAGGAAGTCG TGTGCTCCTT TCTAAAGGCA CTGAGAAGCC TTCATTGTTT ACATCTTTCA
  CGGGGCATTT GGCAAGCGGT TTTTTAGAGC TAAGCACACG ATCGTGTTGT AAGATAACAG
  W
  TATTGTGATG TGGTTTTCTT TTCTTTTTGC AGTGAATATT TACTGACCAC CTAGTACTCT
  GGTGCCTGAC TCTTTTAGAC CCCTGGGAAG TAGCCCTACC AATACTTGAA TTCACGTTCT
  AGTGGGGGCT TATAATAAGC AACATGAATT AACACCATAT TTAGTGACAG GCCTTCAGGA
  GAATAGTAAG TAAGGCAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46813244	NES10715243	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33433494					SNP	A	A	A	A	A	A	A	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813244	NES10715243	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101204005 () rs orientation: forward

Symbol	Name	Function Class
Gm32803	predicted gene, 32803	81 bp upstream
Gm65445	predicted gene, 65445	797 bp upstream
Rr397890	regulatory region 397890	787 bp downstream
Rr581999	regulatory region 581999	707 bp distal
Rr582000	regulatory region 582000	967 bp distal
Rr582001	regulatory region 582001	within coordinates
Rr582002	regulatory region 582002	473 bp proximal
Tssr30898	transcription start site region 30898	792 bp upstream
Tssr30899	transcription start site region 30899	834 bp upstream
Tssr34786	transcription start site region 34786	123 bp upstream