rs33432688 SNP Detail

Summary

• ID
  rs33432688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101203932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACCTAGA CATAAAATAC
  TGAAGCTAAG AGTGCTGCGC CTGAGCCAGC TCCAGCATCC TAGGCAAAGG AGCCCTGTCG
  AAGAGAGGGA GGGACACACG CTCCCATCAA CGGAGGAAAG AGGCAGGCAA GCCGCAGAGG
  GAGGCTGAAG GTCCAGGAAG TCGTGTGCTC CTTTCTAAAG GCACTGAGAA GCCTTCATTG
  Y
  TTACATCTTT CACGGGGCAT TTGGCAAGCG GTTTTTTAGA GCTAAGCACA CGATCGTGTT
  GTAAGATAAC AGATATTGTG ATGTGGTTTT CTTTTCTTTT TGCAGTGAAT ATTTACTGAC
  CACCTAGTAC TCTGGTGCCT GACTCTTTTA GACCCCTGGG AAGTAGCCCT ACCAATACTT
  GAATTCACGT TCTAGTGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46813238	NES10715237	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33432688					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813238	NES10715237	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101203932 () rs orientation: forward

Symbol	Name	Function Class
Gm32803	predicted gene, 32803	8 bp upstream
Gm65445	predicted gene, 65445	870 bp upstream
Rr397890	regulatory region 397890	714 bp downstream
Rr581999	regulatory region 581999	634 bp distal
Rr582000	regulatory region 582000	894 bp distal
Rr582001	regulatory region 582001	within coordinates
Rr582002	regulatory region 582002	546 bp proximal
Tssr30898	transcription start site region 30898	865 bp upstream
Tssr30899	transcription start site region 30899	907 bp upstream
Tssr34786	transcription start site region 34786	50 bp upstream