rs33430646 SNP Detail

Summary

• ID
  rs33430646
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:13667024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGCCCATC TACAGGAACA
  CGGACAGCCT CTGGCATAAG AAACTGGATT CTCCTCCCTC TGCAGCCACT GATGTCAATA
  GCTCCATCCA TGCTGGAACT GGGGCTGGCT TGTATCGTGC AGGTCTCGTG CATACAATCC
  AAGCTACAGT GGGTACATGT CTGTGACAGC ACTGTGTTGT GTCATCATTG CATCATTGCA
  M
  ACACATATAT ACACATACAG TTCATGATTA AAAAAGAATA AACTCAGAGA AATATCAATA
  ATAACTTGTT TAACTACAGT TGTAAAATCA ACTTAATCAT ATGATTTATC TTCCAAAATT
  CTAGAACAAA GTTCACAATA CCATGTCTTC TACTTCTACT TTTATATTTT CTTTATATTT
  ATATTTCTAA ATACCCATTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47797656	NES11720654	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33430646					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47797656	NES11720654	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13667024 () rs orientation: forward

Symbol	Name	Function Class
Rr626579	regulatory region 626579	1000 bp distal
Samtor	S-adenosylmethionine sensor upstream of mTORC1	Intron