rs33430485 SNP Detail

Summary

• ID
  rs33430485
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:67395791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCATAGTG ATGCCAGGAC ACTGAACCTC CGTGCCAAGG
  CTCTGGGGAC AGTTACCCGG GAGTGTCGGG TCATGCCAAG ATGCTCTTCG AGGGTAGACA
  R
  AAAGCGCCCG GGGTCCACAT TTGTGGGCCG GGCTTCTTCC CTGTGTCTTG GGCTTGGGCT
  TCGGGGCCCA AGTCCCCCAC CCGTCGCCCC AGCCCTGCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
ss45277886	mCV22605986	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss320326799	CHEV_2_67403504	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
rs33430485					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:67395791 () rs orientation: forward

Symbol	Name	Function Class
B3galt1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	mRNA-UTR
Cpgi11705	CpG island 11705	within coordinates
Rr558220	regulatory region 558220	within coordinates
Rr558221	regulatory region 558221	436 bp proximal
Tssr18010	transcription start site region 18010	233 bp upstream