rs33429862 SNP Detail

Summary

• ID
  rs33429862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:13666069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGAAACT TCCTTTCCTC
  TATAATTAAC TGTTAGCTAC AAGATGCAAA GGCGATTGTA ACTACAGAGA GCCTACTTCC
  CTATAGCATT TTAGAAGGCC TCTGCATACT TCACATTAAC CAAAACTGTC TTTAAGTCGT
  CCTTTTCATC ATACTTCACA TTAACCAAAA CTGTCTTTAA GTCGTCCTTT TCATCATACT
  Y
  CACATTAACC AAAACTGTCT TTAAGTCGTC CTTTTCATGT CTTTTGAGGT TCATTATCTG
  CTTATCTAAC ATTTTAAAGG ATTCAATTCG TATGTACTTG ATTGACATCA ATTACAAACA
  ACTTAATATT GTAATATTTT CATTAGCAGT CAGGTTTACA GTCTCAATGT GTGCCGAGAC
  TGAAAGCTAA TATGTGTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47797652	NES11720710	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	T	T	T	T		T	T		T
ss321748468	CHEV_6_13616070	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33429862					SNP	T	T	T	C	T	C	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47797652	NES11720710	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13666069 () rs orientation: forward

Symbol	Name	Function Class
Rr626579	regulatory region 626579	45 bp distal
Samtor	S-adenosylmethionine sensor upstream of mTORC1	Intron