rs33426998 SNP Detail

Summary

• ID
  rs33426998
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:11262063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCTTGAAATC CTGGAACTCC GGGCAGTCCC ATATCTCCCT TTGAACCTGT GATCCCTGGA
  GAGCCGCCAA TGCCCTAGGT ACCAAAGGAA GTGTGAGCTG GACATGGCTC TAGACACCCA
  GTTTGTACCC TGCGTACCCT GTCAGGCAAA AAGCACTTCT GTGTTCTGCA CAGGAGTTTG
  TGAGCTCAGG TGGGTCATAC AATTCTTTAA ACGACAGAAC ACGAGAAGAT AACTGCAACA
  CTGGTCCCCT GGTCTCTCTT TACTGGTCCA TATACACAGC AGTTCCTTCG AGCTTGTAGC
  Y
  GCTGTCCCCA CCCACCAGCA TGATGCCATG ACACAGCCAC AATACCATGG ACAGTTGCCA
  TGGAAACAAA CCCAGTTCTA TCAGGACCAT ACCACCCTTC TGGTCTCTTC ATCGTCAAAG
  GGCAGTGAGT GTTCCTTAAA ACCAGCCTCA TGCCCCATCT GAATTATTAT TTTAATTATG
  GAGAAAATAT TTTAAAACAC CTGAGCCTCT GCCAACTCTA GAAGACAATT CTCAGGCTGT
  GAAGAACTGC TCTTTACCAA GATACTGAAT ACTTGCACTG AATTTGTAAA TGGGTTGTAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46274689	mCV23753074	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss148666914	ENSMUSSNP6971069	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33426998					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11262063 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col4a1	collagen, type IV, alpha 1			Intron
				Noncoding-Transcript-Variant
Tssr80369	transcription start site region 80369			486 bp upstream