rs33426842 SNP Detail

Summary

• ID
  rs33426842
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:166525314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCCCCTC TGTGGTCTTC
  CCAGGGATTT CTGCCTAGAG ATGAGAAAAC AGCAATCCCA AAAACCCACG TAGGTCCCCA
  GACTGTTTTC TCACCTAGCC AGCCAGGCTG CTCCTGTCCT CCCCACCCCT GCTCAAAGGT
  GACTCAATGG CAGCCTCTGC TCTGACCTCC CATGCCTTTC TGTTGCCCCA CTGACTCCCA
  R
  GGAAAACTAC ATCCTGCCTG GCAGCAGAAC CCAGGCTCAG AGCATCAGCA TCTCTTGCCT
  GCCTGGCTTT GCCTTCCCTA GGCCAGCTTC TAGTTCCCGC CTCAGCAGGT GGCCAAGCCT
  TGGATCACCT CTTGCTCATC TCAGAGCAGC ACTTAGGGCA GTGCCTGGTG GCCTAACAGG
  GCTGAGAAAA CGTCCCATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss45276978	mCV23066181	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss148258099	ENSMUSSNP4546458	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs33426842					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166525314 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56395	predicted gene, 56395			974 bp downstream
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1			Intron
				Noncoding-Transcript-Variant
Rr570343	regulatory region 570343			117 bp distal
Rr570344	regulatory region 570344			215 bp proximal