rs33426788 SNP Detail

Summary

• ID
  rs33426788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101055400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAGCTAA ACCTACTAGT
  TTTTATATTA GGAAAGTGAC ACAAGTTATG TTCTCTGTCT GGTCTGTCAC CTAAACTGAC
  TAGCAAGTCA GTGATCTGAA AACTTCAAAG TAAAAAAGAC AAACGTGCTG ACGCTGAACA
  ATACATTCCT AGGTAGTAGC TCCAAAGCTA AATTCTATCC AAGTGGCATG AAAAGCAATC
  Y
  GTGAGGTGCT GAGAGACAGC TTCATGGCAT CTACCCAATT AAAACTGTTG CTTTCCTTGC
  AAACCTTATT GTTAAAGATA GTCTCAACTT ACTGCCATCA GATTTGGGAG AAAGTGATTA
  GAGAACACAA AACTATATGT AAAAAGATTT GAGTCTTTAA GTTTAAAAAT TGTTTTTAGC
  AAGATCTTTA GCTGTTGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46811693	NES10721878	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33426788					SNP	C	C	C	C	C	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46811693	NES10721878	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101055400 () rs orientation: forward

Symbol	Name	Function Class
Rr581969	regulatory region 581969	1355 bp distal