rs33425658 SNP Detail

Summary

• ID
  rs33425658
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101077821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTCCTT GGCCAATCAA
  TCTTTAATAA TTCTTTAACC ATCAGGATAT ATTCGGTGTG ATTGGATATC CTGTAAATGC
  TGGTCAAAGG GCCGAGTTCT GTGTCAAGTG TGGCATGGAG TTAAAGAGTC AGCCAAACAG
  ATGGGATGGA TGACCAACAT CTGGATCACA GATGCTTATG TATACAGAAA CATTGCCTCG
  R
  CGTGTACGAA AAACTCTGTT ACTAGGGTAA CCTTTAGAGA GTGAGAGAAG AGGGTATGGT
  CTAGAGGTAG GTTTGGGCTT TTCAGTTCAT ACTCTATTGG CATTTTTACT TCTTATTCTG
  TTTTTATTTA TTTATTTATT TATGGAGACC GGGGTGGGGG GGGGGAAGGT CTTGCTGTGT
  AGCTCAGGAA GGGCAATCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46812020	NES10720825	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33425658					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46812020	NES10720825	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101077821 () rs orientation: forward

Symbol	Name	Function Class
Rr375458	regulatory region 375458	1793 bp downstream
Rr581973	regulatory region 581973	within coordinates