rs33425044 SNP Detail

Summary

• ID
  rs33425044
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101052799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACAGGAA ATGGGGACAG
  CATTCATTAA TAACCGAAGG AGGGTCTGAG GAAAACTAGA TGCTGTATAA AGAGAAGAAG
  CTGCAAACTA AGAAGCCCTG GTGGAAATGA AGTGCTCAAC CAGTCCTGCA TCCATTAAAG
  TAATAACATC ATCGAATGGC GGGTTTATCA CTCCCTTGCA GCCCCTCAGC CTGGAAGCTG
  M
  GGCTCTTTTT AAAAATGAGA GAGGAGTTGC ATGCCGCTCC TCCAGTGTGG AAGGGCAGGT
  CTCCCTGTGC CCCCTCCCAA GCGCTTCCCT CCCCAGCCTT GGACTTCTCC CAGCCTCTAG
  GACCATCGCT AAAATTCATT TCACTCTTTA ATTAGATTTC ATGGAGTAAG GGATTGGGAG
  GGTGCTGGGA AAGGCGTGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46811666	NES10722010	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	C	C	C	C		C	C	C	C		C
ss135544453	ENSMUSSNP5795233	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
ss320851103	CHEV_3_100949406	CHEVERUD	SCREENING_POP	f	SNP									A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33425044					SNP	C	C	A	C	C	C	C	C	A	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46811666	NES10722010	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101052799 () rs orientation: forward

Symbol	Name	Function Class
Rr581969	regulatory region 581969	within coordinates