rs33423222 SNP Detail

Summary

• ID
  rs33423222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101076736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGATGAAG AGGAGAGAAA
  GAGGAGAAAA AAGAGGAAGT GGAGGAGGAG CATAGGAGGA AGGGGAAAGG AAGAGAGGGA
  GGAGGGGAAG AGGAGAGGAA GGGAGAAGGG ACAAAGGAGG AGGGGAGAAG GAGAAAGAAG
  AAGGGGAGGA AGAGAAGGAG TAGAGAAAAC GTTCAGAGTA AGAGAATGCA ACAGCTGAGC
  R
  CAGTGGAGAG GCTGAACCAG CAGGAACTAA GGTTTGTGGT GGACACTGAG AGCTTGTATG
  GGGGCGGGGG GGGGGGAAGT AAAGAAGAAA TGTGAGTGTT CTTGAGGGAG TGGAGCTCAG
  AGGAGGAGCT TGTCCCATGC TTGTGAGGCC TGGGTTCATT TCTCATACTG TAAGTGTGCC
  AGCCCCCACA CTCCTACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46811990	NES10720894	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33423222					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46811990	NES10720894	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101076736 () rs orientation: forward

Symbol	Name	Function Class
Rr375458	regulatory region 375458	708 bp downstream
Rr581973	regulatory region 581973	686 bp proximal