rs33421879 SNP Detail

Summary

• ID
  rs33421879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101050248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACAGACA TACATGCAGT
  AAAATATTCA TACGACATAA AACAAAAATA AAAGCAAGCA AATTAAAAGT AAGATTGGAG
  TACTGATCAC ACATGTACGT ACCTCATTTT GACTCAGTTT GATCCACTTT GCCTGGCTAG
  ACTTACTGCC CAGAACTAAG TCTGAGAACA GGGAAGATGG ACTGTTTTCA CCAAGGTCCC
  R
  TCTGATCCAG ACATATACGG GATCTTATGG TTTCCCATAG AACTGAGCCC AGTTGGGACT
  AGGACCCTGT TCATGGCCCT ACAGTTTGAA GGGCCCCAAT CCAAGCTAGG ACAGTACTGT
  AGAAAGAGAA GTCCCCACTG ACCACCTGAA GCACCACCCT CCCCCTCATA TTGTCCACTC
  CCTTTCCATC CCTGGCATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46811627	NES10722050	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33421879					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46811627	NES10722050	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101050248 () rs orientation: forward

Symbol	Name	Function Class
Rr581968	regulatory region 581968	866 bp distal
Rr581969	regulatory region 581969	1958 bp proximal