rs33421876 SNP Detail

Summary

• ID
  rs33421876
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101050217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGTCTCA ATCGGCACTG
  TATGCACCTG GAACACAGAC ATACATGCAG TAAAATATTC ATACGACATA AAACAAAAAT
  AAAAGCAAGC AAATTAAAAG TAAGATTGGA GTACTGATCA CACATGTACG TACCTCATTT
  TGACTCAGTT TGATCCACTT TGCCTGGCTA GACTTACTGC CCAGAACTAA GTCTGAGAAC
  R
  GGGAAGATGG ACTGTTTTCA CCAAGGTCCC GTCTGATCCA GACATATACG GGATCTTATG
  GTTTCCCATA GAACTGAGCC CAGTTGGGAC TAGGACCCTG TTCATGGCCC TACAGTTTGA
  AGGGCCCCAA TCCAAGCTAG GACAGTACTG TAGAAAGAGA AGTCCCCACT GACCACCTGA
  AGCACCACCC TCCCCCTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46811624	NES10722048	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33421876					SNP	A	A	G	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46811624	NES10722048	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101050217 () rs orientation: forward

Symbol	Name	Function Class
Rr581968	regulatory region 581968	835 bp distal
Rr581969	regulatory region 581969	1989 bp proximal