rs33421799 SNP Detail

Summary

• ID
  rs33421799
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101007188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGC TGCAGAGGGA AAGCAGGAAT
  S
  CCTGGTACTG CAAAGGAGAC TAGCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss46811393	NES10724026	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	G		G	C	G
ss320850907	CHEV_3_100903795	CHEVERUD	SCREENING_POP	f	SNP						C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs33421799					SNP	C	C	G	C	G	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46811393	NES10724026	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101007188 () rs orientation: forward

Symbol	Name	Function Class
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581957	regulatory region 581957	1325 bp distal
Rr581958	regulatory region 581958	1570 bp distal
Rr581959	regulatory region 581959	within coordinates