rs33421796 SNP Detail

Summary

• ID
  rs33421796
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101006927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGCTGCC AACACCTTTC
  AGGGTGACTT TGCAACAGTC TTCCTCTCCA CCCACTCCCT GCCCAGAATT TAATATCCAC
  AGCCCCTGAG GAGTCTTACT TTCCTAGCTT AAGTCAGCTA ATCCCTAAAT GGGATGCCGG
  GCTAGCCATG TTCATCTCCT CCCGTGGTCA TTTTCCTACC TGAACACCTT GGCACTCGCT
  K
  GCCCACCTGC TCTGCGAACA TTTCCCATGA TAACAGCTCC TGGTCCAAGA TCTACCCCTT
  TAATTCTGAC AGCCCCATAT GCACAGCCAT CTAATAACTC ATTCACTCCG ATCCTTAAAA
  GCATGAAGGA TCCACCCCTC TGTTCAGTTA CAACTGGCTC CATTTCTTCT TGGGACTGCC
  TTTCTTAATT CCTTTGTCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46811390	NES10724025	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs33421796					SNP	G	G	G	G	G	G	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46811390	NES10724025	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101006927 () rs orientation: forward

Symbol	Name	Function Class
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581957	regulatory region 581957	1064 bp distal
Rr581958	regulatory region 581958	1309 bp distal
Rr581959	regulatory region 581959	90 bp proximal