rs33420777 SNP Detail

Summary

• ID
  rs33420777
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101004180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCTACAT GTAGCCAGGC
  ATGCCCCACC TTTTTATATA GAATGACCTC AATGAAGTCC AATCTGGGAA CCATGTGATC
  AAGTTACTTA AAACAAAGAA ACAAACAAAT AGTATGCTTT AAGTTTATGG CTTTGTGTTG
  GACAACGTGT ATGGCATGTG TGGCTCTTCT CAAAGGCTTG CAACACACCC TCTCCCTTAC
  W
  CGTCATCCTG CACTCCAGCT GCAAGCTTTC TTTATTCATT CAAAGCCAAC TTCCAGGAAA
  GGGGGGGGGG GTGGCGGGGG CACACACCTG TAATACCAGC ACTTGAGATA AAAAAAAAAA
  AAAGGATCTT AAATGTGAGG CCAGATTAGG ATTTATCATG TGCTTTCAAT ACCAGCCTGG
  TTTCCATAGG GAGACCTTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46811378	NES10724157	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33420777					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46811378	NES10724157	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101004180 () rs orientation: forward

Symbol	Name	Function Class
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581955	regulatory region 581955	532 bp distal
Rr581956	regulatory region 581956	230 bp proximal
Rr581957	regulatory region 581957	1233 bp proximal
Rr581958	regulatory region 581958	1417 bp proximal
Tssr34769	transcription start site region 34769	201 bp downstream