rs33420366 SNP Detail

Summary

• ID
  rs33420366
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127597648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACGTGAAGGA TTTGGCTCCA AGGGAAAGTG TATTTTGTTA GGATGCAGCT GTGCTCTCCG
  CTGCTCTACT GCTCGCTTCG TTTACGGAAA GAAGGGTAAT AAGGTTCTAC ATGCCACTGC
  AAGGCCCGGG AGTGCTGCAG ACACGGCCCA ATGGATAAGA ACACTGGCTG CTCTTGCAGA
  GGACACAGGT CCAGTTCCCA GCACCCACAT GGTAGCTCAC AACCATCTGT AACATCTGAC
  GGCCTCTTCT GACCTCCACA GGCACCAAGC ATGCAATGCA GTTCAGAGAC ATACATGCAT
  W
  AAAAAAAAAA AAAAAGTCTT AAAAAAGACC TATCTATACT ATGGAGGTGG TGGAACCATT
  TAGGGGTGGG GCCTTCAGGG ACACATTCAG GCATTCAGGC ACTGGGCTGT GCCTATGGAG
  ATACAGGGAC CCATGCCCCT CTGTGCTGCT CCCCAGCCCC TGAGGGATGG AAGGCTTCTT
  TACCACATGC TTCGCCATGG TGTTCTTTGT TAACAGAGAC CCAAAGCAAT AGGGCCAACG
  GGCCAGAGAC TGAACCCTGT GGAAATGTAG ACCCAAATAA ACCCTCCCTC CTTTAGCTTG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45276313	mCV22279933	ABI	CRAMUS_MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs33420366					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127597648 () rs orientation: forward

Symbol	Name	Function Class
Nphp1	nephronophthisis 1 (juvenile) homolog (human)	Intron
Rr564596	regulatory region 564596	1438 bp proximal
Tssr26143	transcription start site region 26143	10 bp upstream