rs33418116 SNP Detail

Summary

• ID
  rs33418116
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100993655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTACCTTCC TTTCTGGAAG
  TGCCACCATG CCTGAGTTGC CTAGGGCCTC TGCTTCACTG TCTCCTTTAG CCAGCATCCC
  TTCCCAGCCT TCTCCTGCTC AGAGGGGGCT TCAGCACCAT CTCCCCTCCG TGAAGCATCT
  CAGGTACTCC TTCCTCAAAT TCTACTGCAA TCTGCGCAAG TACCTGGATG GAAGCTATGT
  W
  ACAGTGTCAC TGGGGAACCA AGCCGGTGGA AGCAGATGCT TGAAAGAGCA AATTCTAATC
  TGAAAGCCCA TGAGCCTAAG TAATGTCTTG TACACAAGAA CCTGGGTTGT CCTCTCATCC
  GAGTAAATGG AGATTTAAGA TTTGGGTAGC AGAGTTTCAA CTTGCCAGCA GCAATCTGGT
  ATTTAGTACA GATTCCCCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46811174	NES10724813	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33418116					SNP	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46811174	NES10724813	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100993655 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43465	predicted gene 43465			within coordinates
Ptgfrn	prostaglandin F2 receptor negative regulator			Intron
				mRNA-UTR
Rr581954	regulatory region 581954			195 bp proximal