rs33418044 SNP Detail

Summary

• ID
  rs33418044
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101012263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGCAGCAA AGTGCTTCTA
  TGTCATTTAG ATTCCATGGC AGCACGCCTT CTGCAATGAA CCTTGAACCT GTGAGCACGA
  CTTCGCTCTT TAATGTTCTC AGCCAGATTC ACCCAAAACA GAACAGCATC CGAAGCGCGG
  TCCCTCGGTC CCCTGAAACA TTCCAGGTGA TGCTAACGCT TCCACGTTCC AGCTGCTCGC
  R
  GAGGTGTAAA ACAGGCTGCA GGTAGAGCCT TGGAATGCTT AAACTTGAGT CATGCCACGT
  AGCGACTCCG TCACCCAGCA CAAACACTCA GGGAACACTG AGTGAAATAA ACATTCAAAG
  AGCATAAACA CGCATTTCCA TTGTCTTGTC TCCTGGGAAT CACACTGCTG GTATGTGATG
  CATTTGCCAC TGGGTCTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	FVB/NJ	KK/HlJ	PWD/PhJ
ss46811432	NES10723608	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	FVB/NJ	KK/HlJ	PWD/PhJ
rs33418044					SNP	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46811432	NES10723608	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101012263 () rs orientation: forward

Symbol	Name	Function Class
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581960	regulatory region 581960	470 bp proximal
Tssr34770	transcription start site region 34770	1404 bp downstream