rs33417323 SNP Detail

Summary

• ID
  rs33417323
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100993116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTATGTG TATGTGCATG
  TGCACATGAA TGCAGGTACC CATGGAGGAT AGACACATCA AATGCACTTG GATGTGACCT
  AACATGGTTG CTGAGACCTG AACACCTCCA GAGACTTTGC AAGAGCAATA TATGTTGAAC
  ACTTAACCAC TGAGCTGTCT GTCTCTCCAG CTCAAACCTC AGGTCACTTG CATATCGCTT
  Y
  AGGCCTGAAC ACTGGAGGTC ATTCACCCTA CTGGTTCTTC AACCAACCTT TCCTGGTCCC
  CTAAAATGGT CCCATTTTTA TTGACCTCAA AACTTCCTCT TACCACTGGT CATTATACTG
  TAGCTTATAT GCACTCATAG GATATTATTA ATAATCATCT ATCTCTTCCC ATTATGACCA
  TTATGTGTCT ACAGCAGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46811171	NES10724857	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33417323					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46811171	NES10724857	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100993116 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm43465	predicted gene 43465			within coordinates
Ptgfrn	prostaglandin F2 receptor negative regulator			Intron
				mRNA-UTR
Rr581954	regulatory region 581954			734 bp proximal