rs33417291 SNP Detail

Summary

• ID
  rs33417291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101012239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGAGTCT GAGAAGTAAC
  CTATCCGGCA GCAAAGTGCT TCTATGTCAT TTAGATTCCA TGGCAGCACG CCTTCTGCAA
  TGAACCTTGA ACCTGTGAGC ACGACTTCGC TCTTTAATGT TCTCAGCCAG ATTCACCCAA
  AACAGAACAG CATCCGAAGC GCGGTCCCTC GGTCCCCTGA AACATTCCAG GTGATGCTAA
  Y
  GCTTCCACGT TCCAGCTGCT CGCAGAGGTG TAAAACAGGC TGCAGGTAGA GCCTTGGAAT
  GCTTAAACTT GAGTCATGCC ACGTAGCGAC TCCGTCACCC AGCACAAACA CTCAGGGAAC
  ACTGAGTGAA ATAAACATTC AAAGAGCATA AACACGCATT TCCATTGTCT TGTCTCCTGG
  GAATCACACT GCTGGTATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	MOLF/EiJ	PWD/PhJ
ss46811429	NES10723607	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	MOLF/EiJ	PWD/PhJ
rs33417291					SNP	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46811429	NES10723607	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101012239 () rs orientation: forward

Symbol	Name	Function Class
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581960	regulatory region 581960	494 bp proximal
Tssr34770	transcription start site region 34770	1428 bp downstream